#include <Genotype.h>

Inheritance diagram for Genotype:

Public Member Functions
virtual bool	initialize (StateP state)=0
	Initialize a genotype object (read parameters, perform sanity check, build data) More...

virtual Genotype *	copy ()=0
	Create an identical copy of the genotype object. More...

virtual std::vector< CrossoverOpP >	getCrossoverOp ()
	Create and return a vector of crossover operators. More...

virtual std::vector< MutationOpP >	getMutationOp ()
	Create and return a vector of mutation operators. More...

virtual void	registerParameters (StateP)
	Register genotype's parameters (called before Genotype::initialize) More...

bool	registerParameter (StateP state, std::string name, voidP value, enum ECF::type T, std::string description="")
	Register a single parameter. More...

voidP	getParameterValue (StateP state, std::string name)
	Read single parameter value from Registry. More...

bool	setParameterValue (StateP state, std::string name, voidP value)
	Write single parameter value to Registry. More...

bool	isParameterDefined (StateP state, std::string name)
	Check if parameter is defined in the configuration. More...

virtual void	read (XMLNode &)=0
	Read genotype data from XMLNode. More...

virtual void	write (XMLNode &)=0
	Write genotype data to XMLNode. More...

virtual uint	getGenomeSize ()

std::string	getName ()
	Return genotype's name (each genotype is uniquely identified with its name). More...

uint	getGenotypeId ()
	Return this genotype's index in individual structure. More...

void	setGenotypeId (uint id)
	Set genotype index in an individual. More...

std::string	toString ()
	Output genotype to string. More...

Protected Attributes
std::string	name_
	genotype's name More...

uint	genotypeId_
	this genotype's unique index in individual structure More...

Detailed Description

Genotype base class.

All Genotypes must inherit this one. Each individual contains a vector of Genotype objects. Each Genotype is an independent object with independent parameters.

Each Genotype class must provide its CrossoverOp and MutationOp operator classes!

Genotype usage

A Genotype instance is active if it is used in the individual structure. Active genotypes may be of any number and kind; each active Genotype instance gets an index, e.g.:

Binary (id: 0) Binary (id: 1) Bitstring (id: 2) Tree (id: 3)

A genotype instance becomes active if:

it is stated in <Genotype> block of configuration file;
it is added with State::setGenotype function.

Definition at line 35 of file Genotype.h.

Constructor & Destructor Documentation

◆ Genotype()

Genotype::Genotype ( )

inline

Definition at line 40 of file Genotype.h.

◆ ~Genotype()

virtual Genotype::~Genotype ( )

inlinevirtual

Definition at line 42 of file Genotype.h.

Member Function Documentation

◆ copy()

virtual Genotype * Genotype::copy ( )

pure virtual

Create an identical copy of the genotype object.

Implemented in Tree::APGenotype, Binary::Binary, BitString::BitString, cart::Cartesian, FloatingPoint::FloatingPoint, Permutation::Permutation, Tree::Tree, ClassifierParams, Tree::APGenotype, cartesian::Cartesian, Tree::MyTree, IntGenotype::IntGenotype, IntGenotype::IntGenotype, GEPChromosome::GEPChromosome, and Tree::IATree.

◆ getCrossoverOp()

virtual std::vector< CrossoverOpP > Genotype::getCrossoverOp ( )

inlinevirtual

Create and return a vector of crossover operators.

Reimplemented in Tree::APGenotype, Binary::Binary, BitString::BitString, cart::Cartesian, FloatingPoint::FloatingPoint, Permutation::Permutation, Tree::Tree, ClassifierParams, Tree::APGenotype, cartesian::Cartesian, Tree::MyTree, IntGenotype::IntGenotype, IntGenotype::IntGenotype, and GEPChromosome::GEPChromosome.

Definition at line 52 of file Genotype.h.

◆ getGenomeSize()

virtual uint Genotype::getGenomeSize ( )

inlinevirtual

Definition at line 82 of file Genotype.h.

◆ getGenotypeId()

uint Genotype::getGenotypeId ( )

inline

Return this genotype's index in individual structure.

Definition at line 90 of file Genotype.h.

◆ getMutationOp()

virtual std::vector< MutationOpP > Genotype::getMutationOp ( )

inlinevirtual

Create and return a vector of mutation operators.

Reimplemented in Tree::APGenotype, Binary::Binary, BitString::BitString, cart::Cartesian, FloatingPoint::FloatingPoint, Permutation::Permutation, Tree::Tree, ClassifierParams, Tree::APGenotype, cartesian::Cartesian, Tree::MyTree, IntGenotype::IntGenotype, IntGenotype::IntGenotype, and GEPChromosome::GEPChromosome.

Definition at line 59 of file Genotype.h.

◆ getName()

std::string Genotype::getName ( )

inline

Return genotype's name (each genotype is uniquely identified with its name).

Definition at line 86 of file Genotype.h.

◆ getParameterValue()

voidP Genotype::getParameterValue	(	StateP	state,
		std::string	name
	)

Read single parameter value from Registry.

Definition at line 10 of file Genotype.cpp.

◆ initialize()

virtual bool Genotype::initialize ( StateP state )

pure virtual

Initialize a genotype object (read parameters, perform sanity check, build data)

Implemented in Tree::APGenotype, Binary::Binary, BitString::BitString, cart::Cartesian, FloatingPoint::FloatingPoint, Permutation::Permutation, Tree::Tree, ClassifierParams, Tree::APGenotype, cartesian::Cartesian, Tree::MyTree, IntGenotype::IntGenotype, IntGenotype::IntGenotype, and GEPChromosome::GEPChromosome.

◆ isParameterDefined()

bool Genotype::isParameterDefined	(	StateP	state,
		std::string	name
	)

Check if parameter is defined in the configuration.

Definition at line 22 of file Genotype.cpp.

◆ read()

virtual void Genotype::read ( XMLNode & )

pure virtual

Read genotype data from XMLNode.

Implemented in Permutation::Permutation, Tree::Tree, ClassifierParams, Binary::Binary, BitString::BitString, cart::Cartesian, cartesian::Cartesian, Tree::APGenotype, FloatingPoint::FloatingPoint, Tree::APGenotype, GEPChromosome::GEPChromosome, IntGenotype::IntGenotype, and IntGenotype::IntGenotype.

◆ registerParameter()

bool Genotype::registerParameter	(	StateP	state,
		std::string	name,
		voidP	value,
		enum ECF::type	T,
		std::string	description = `""`
	)

Register a single parameter.

Definition at line 4 of file Genotype.cpp.

◆ registerParameters()

virtual void Genotype::registerParameters ( StateP )

inlinevirtual

Register genotype's parameters (called before Genotype::initialize)

Reimplemented in Binary::Binary, BitString::BitString, cart::Cartesian, FloatingPoint::FloatingPoint, Permutation::Permutation, ClassifierParams, cartesian::Cartesian, IntGenotype::IntGenotype, IntGenotype::IntGenotype, GEPChromosome::GEPChromosome, Tree::APGenotype, Tree::Tree, and Tree::APGenotype.

Definition at line 66 of file Genotype.h.

◆ setGenotypeId()

void Genotype::setGenotypeId ( uint id )

inline

Set genotype index in an individual.

Definition at line 94 of file Genotype.h.

◆ setParameterValue()

bool Genotype::setParameterValue	(	StateP	state,
		std::string	name,
		voidP	value
	)

Write single parameter value to Registry.

Definition at line 16 of file Genotype.cpp.

◆ toString()

std::string Genotype::toString ( )

inline

Output genotype to string.

Definition at line 98 of file Genotype.h.

◆ write()

virtual void Genotype::write ( XMLNode & )

pure virtual

Write genotype data to XMLNode.

Implemented in Permutation::Permutation, Tree::Tree, ClassifierParams, Binary::Binary, BitString::BitString, cart::Cartesian, cartesian::Cartesian, Tree::APGenotype, FloatingPoint::FloatingPoint, Tree::APGenotype, GEPChromosome::GEPChromosome, IntGenotype::IntGenotype, and IntGenotype::IntGenotype.

Member Data Documentation

◆ genotypeId_

uint Genotype::genotypeId_

protected

this genotype's unique index in individual structure

Definition at line 110 of file Genotype.h.

◆ name_

std::string Genotype::name_

protected

genotype's name

Definition at line 109 of file Genotype.h.

The documentation for this class was generated from the following files:

D:/Projekt/ECF_trunk/ECF/Genotype.h
D:/Projekt/ECF_trunk/ECF/Genotype.cpp

Public Member Functions

Protected Attributes

Detailed Description

Constructor & Destructor Documentation

◆ Genotype()

◆ ~Genotype()

Member Function Documentation

◆ copy()

◆ getCrossoverOp()

◆ getGenomeSize()

◆ getGenotypeId()

◆ getMutationOp()

◆ getName()

◆ getParameterValue()

◆ initialize()

◆ isParameterDefined()

◆ read()

◆ registerParameter()

◆ registerParameters()

◆ setGenotypeId()

◆ setParameterValue()

◆ toString()

◆ write()

Member Data Documentation

◆ genotypeId_

◆ name_