Tree::APGenotype Class Reference

Analytical Programing genotype class - implements genotype as a vector of floating point values that translates to Tree genotype. More...

#include <APGenotype.h>

Inheritance diagram for Tree::APGenotype:

Public Member Functions
void	registerParameters (StateP)
	Register genotype's parameters (called before Genotype::initialize).
bool	initialize (StateP state)
	Initialize a genotype object (read parameters, perform sanity check, build data).
virtual void	initializeFirst (APGenotype *persistent)
bool	addFunction (PrimitiveP)
bool	addTerminal (PrimitiveP)
void	buildTree (std::vector< uint > indices, uint current, uint depth)
std::vector< uint >	getDiscreteIndices ()
Tree *	convertToPhenotype ()
double	getLBound ()
	return lower bound of the defined interval
double	getUBound ()
	return upper bound of the defined interval
APGenotype *	copy ()
	Create an identical copy of the genotype object.
std::vector< CrossoverOpP >	getCrossoverOp ()
	return usable crx operators
std::vector< MutationOpP >	getMutationOp ()
	return usable mut operators
void	setTerminalValue (Tree *tree, std::string name, void *value)
void	write (XMLNode &xFloatingPoint)
	Write genotype data to XMLNode.
void	read (XMLNode &xFloatingPoint)
	Read genotype data from XMLNode.
Public Member Functions inherited from RealValueGenotype
double	getLBound ()
	return lower bound of the defined interval
double	getUBound ()
	return upper bound of the defined interval
virtual bool	update (void)
	Update genotype after genetic material change via genetic operators.
Public Member Functions inherited from Genotype
bool	registerParameter (StateP state, std::string name, voidP value, enum ECF::type T, std::string description="")
	Register a single parameter.
voidP	getParameterValue (StateP state, std::string name)
	Read single parameter value from Registry.
bool	setParameterValue (StateP state, std::string name, voidP value)
	Write single parameter value to Registry.
bool	isParameterDefined (StateP state, std::string name)
	Check if parameter is defined in the configuration.
virtual uint	getGenomeSize ()
std::string	getName ()
	Return genotype's name (each genotype is uniquely identified with its name).
uint	getGenotypeId ()
	Return this genotype's index in individual structure.
void	setGenotypeId (uint id)
	Set genotype index in an individual.
std::string	toString ()
	Output genotype to string.

Public Attributes
PrimitiveSetAPP	primitiveSet
std::vector< PrimitiveP >	userFunctions_
std::vector< PrimitiveP >	userTerminals_
StateP	state_
std::vector< NodeP >	nodes
uint	toEnd
Public Attributes inherited from RealValueGenotype
std::vector< double >	realValue
	vector of floating point values

Additional Inherited Members
Protected Attributes inherited from RealValueGenotype
double	minValue_
	lower bound
double	maxValue_
	upper bound
uint	nDimension_
	dimensionality
Protected Attributes inherited from Genotype
std::string	name_
	genotype's name
uint	genotypeId_
	this genotype's unique index in individual structure

Detailed Description

Analytical Programing genotype class - implements genotype as a vector of floating point values that translates to Tree genotype.

AP genotype parameters are:

• lbound: lower bound of represented real value (inherited from RealValueGenoptype)
• ubound: upper bound of represented real value (inherited from RealValueGenoptype)
• dimension: number of distinct real values (inherited from RealValueGenoptype)
• terminalset: set of variables (inherited from Tree)
• functionset: set of functions (inherited from Tree)

Definition at line 50 of file APGenotype.h.

Constructor & Destructor Documentation

APGenotype()

Tree::APGenotype::APGenotype ( )

inline

Definition at line 64 of file APGenotype.h.

Member Function Documentation

addFunction()

bool Tree::APGenotype::addFunction

(

PrimitiveP

func

)

Definition at line 25 of file APGenotype.cpp.

addTerminal()

bool Tree::APGenotype::addTerminal

(

PrimitiveP

term

)

Definition at line 32 of file APGenotype.cpp.

buildTree()

void Tree::APGenotype::buildTree	(	std::vector< uint >	indices,
		uint	current,
		uint	depth )

Definition at line 301 of file APGenotype.cpp.

convertToPhenotype()

Tree * Tree::APGenotype::convertToPhenotype

(

)

Definition at line 339 of file APGenotype.cpp.

copy()

APGenotype * Tree::APGenotype::copy ( )

inlinevirtual

Create an identical copy of the genotype object.

Implements Genotype.

Definition at line 94 of file APGenotype.h.

getCrossoverOp()

std::vector< CrossoverOpP > Tree::APGenotype::getCrossoverOp ( )

inlinevirtual

return usable crx operators

Reimplemented from Genotype.

Definition at line 101 of file APGenotype.h.

getDiscreteIndices()

std::vector< uint > Tree::APGenotype::getDiscreteIndices

(

)

Definition at line 274 of file APGenotype.cpp.

getLBound()

double Tree::APGenotype::getLBound ( )

inline

return lower bound of the defined interval

Definition at line 83 of file APGenotype.h.

getMutationOp()

std::vector< MutationOpP > Tree::APGenotype::getMutationOp ( )

inlinevirtual

return usable mut operators

Reimplemented from Genotype.

Definition at line 123 of file APGenotype.h.

getUBound()

double Tree::APGenotype::getUBound ( )

inline

return upper bound of the defined interval

Definition at line 89 of file APGenotype.h.

initialize()

bool Tree::APGenotype::initialize ( StateP state )

virtual

Initialize a genotype object (read parameters, perform sanity check, build data).

Implements Genotype.

Definition at line 39 of file APGenotype.cpp.

initializeFirst()

void Tree::APGenotype::initializeFirst ( APGenotype * persistent )

virtual

Definition at line 68 of file APGenotype.cpp.

read()

void Tree::APGenotype::read ( XMLNode & xFloatingPoint )

virtual

Read genotype data from XMLNode.

Implements Genotype.

Definition at line 393 of file APGenotype.cpp.

registerParameters()

void Tree::APGenotype::registerParameters ( StateP state )

virtual

Register genotype's parameters (called before Genotype::initialize).

Reimplemented from Genotype.

Definition at line 9 of file APGenotype.cpp.

setTerminalValue()

void Tree::APGenotype::setTerminalValue	(	Tree *	tree,
		std::string	name,
		void *	value )

Definition at line 367 of file APGenotype.cpp.

write()

void Tree::APGenotype::write ( XMLNode & xFloatingPoint )

virtual

Write genotype data to XMLNode.

Implements Genotype.

Definition at line 379 of file APGenotype.cpp.

Member Data Documentation

nodes

std::vector<NodeP> Tree::APGenotype::nodes

Definition at line 60 of file APGenotype.h.

primitiveSet

PrimitiveSetAPP Tree::APGenotype::primitiveSet

Definition at line 54 of file APGenotype.h.

state_

StateP Tree::APGenotype::state_

Definition at line 58 of file APGenotype.h.

toEnd

uint Tree::APGenotype::toEnd

Definition at line 62 of file APGenotype.h.

userFunctions_

std::vector<PrimitiveP> Tree::APGenotype::userFunctions_

Definition at line 55 of file APGenotype.h.

userTerminals_

std::vector<PrimitiveP> Tree::APGenotype::userTerminals_

Definition at line 56 of file APGenotype.h.

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The documentation for this class was generated from the following files:

• D:/Projekt/ECF/ECF_master/ECF/apgenotype/APGenotype.h
• D:/Projekt/ECF/ECF_master/ECF/apgenotype/APGenotype.cpp