Genotypes

Modules
	APGenotype
	Binary
	BitString
	FloatingPoint
	Permutation
	Tree
	GEP

Classes
class	Tree::APGenotype
	Analytical Programing genotype class - implements genotype as a vector of floating point values that translates to Tree genotype. More...
class	Tree::PrimitiveSetAP
	Primitive set class for APGenotype: collects all Tree Primitives. More...
class	Binary::Binary
	Binary class - implements genotype as a vector of binary coded real values with variable interval and precision. More...
class	Binary::BinaryCrsHalfUniform
	Binary genotype: half uniform crossover operator. More...
class	Binary::BinaryCrsOnePoint
	Binary genotype: one point crossover operator. More...
class	Binary::BinaryCrsReducedSurrogate
	Binary genotype: reduced surrogate crossover operator. More...
class	Binary::BinaryCrsSegmented
	Binary genotype: segmented crossover operator. More...
class	Binary::BinaryCrsShuffle
	Binary genotype: shuffle crossover operator. More...
class	Binary::BinaryCrsTwoPoint
	Binary genotype: two point crossover operator. More...
class	Binary::BinaryCrsUniform
	Binary genotype: uniform crossover operator. More...
class	Binary::BinaryMutMix
	Binary genotype: mixing mutation operator. More...
class	Binary::BinaryMutSimple
	Binary genotype: simple (bit-flip) mutation operator. More...
class	BitString::BitString
	BitString class - implements genotype as a series of bits. More...
class	BitString::BitStringCrsOnePoint
	BitString genotype: one point crossover operator. More...
class	BitString::BitStringCrsUniform
	BitString genotype uniform crossover operator. More...
class	BitString::BitStringMutMix
	BitString genotype mixing mutation operator. More...
class	BitString::BitStringMutSimple
	BitString genotype simple (one bit) mutation operator. More...
class	FloatingPoint::FloatingPoint
	FloatingPoint class - implements genotype as a vector of floating point values. More...
class	FloatingPoint::FloatingPointCrsArithmetic
	FloatingPoint genotype: offspring is defined as a linear combination of two vectors. More...
class	FloatingPoint::FloatingPointCrsArithmeticSimple
	FloatingPoint genotype: take recombination point k. Child 1 is parent1 until k, rest is arithmetic average of parents. More...
class	FloatingPoint::FloatingPointCrsArithmeticSingle
	FloatingPoint genotype: take random allele k. That point is arithmetic average of parents, other points are from parents. More...
class	FloatingPoint::FloatingPointCrsAverage
	FloatingPoint genotype: child is average value of parent genes. More...
class	FloatingPoint::FloatingPointCrsBga
	FloatingPoint genotype: BGA crossover (http://bib.irb.hr/datoteka/640222.CEC_2013.pdf, http://sci2s.ugr.es/publications/ficheros/IJIS-2003-18-3-309-338.PDF) More...
class	FloatingPoint::FloatingPointCrsBlxAlpha
	FloatingPoint genotype: BLX alpha crossover (http://bib.irb.hr/datoteka/640222.CEC_2013.pdf) More...
class	FloatingPoint::FloatingPointCrsBlxAlphaBeta
	FloatingPoint genotype: BLX alpha-beta crossover (http://bib.irb.hr/datoteka/640222.CEC_2013.pdf) More...
class	FloatingPoint::FloatingPointCrsDiscrete
	FloatingPoint genotype: allele value for each gene is either from parent1 or from parent2 with equal probability. More...
class	FloatingPoint::FloatingPointCrsFlat
	FloatingPoint genotype: value on allele i is random value taken from min-max interval from parents. More...
class	FloatingPoint::FloatingPointCrsHeuristic
	FloatingPoint genotype: value on allele i smaller gene value + rand value * (greater - smaller value) More...
class	FloatingPoint::FloatingPointCrsLocal
	FloatingPoint genotype: local crossover (http://bib.irb.hr/datoteka/640222.CEC_2013.pdf) More...
class	FloatingPoint::FloatingPointCrsOnePoint
	FloatingPoint genotype: one point crossover operator with permissible split points only between dimensions. More...
class	FloatingPoint::FloatingPointCrsRandom
	FloatingPoint genotype: random crossover, for testing purposes. More...
class	FloatingPoint::FloatingPointCrsSbx
	FloatingPoint genotype: SBX crossover (http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.33.7291&rep=rep1&type=pdf, http://www.iitk.ac.in/kangal/papers/k2011017.pdf) More...
class	FloatingPoint::FloatingPointMutSimple
	FloatingPoint genotype: simple mutation where a single vector element is mutated. New value is random value from the given domain. More...
class	Genotype
	Genotype base class. More...
class	Permutation::Permutation
	Permutation class - implements genotype as a vector of indices 0..(n-1) (permutation of indices) More...
class	Permutation::PermutationCrsCOSA
	Permutation genotype: COSA crossover operator (adapted from HeuristicLab) More...
class	Permutation::PermutationCrsCyclic
	Permutation genotype: Cyclic crossover operator (see e.g. http://www.rubicite.com/Tutorials/GeneticAlgorithms/CrossoverOperators/CycleCrossoverOperator.aspx) More...
class	Permutation::PermutationCrsCyclic2
	Permutation genotype: Cyclic version 2 crossover operator (adapted from HeuristicLab) More...
class	Permutation::PermutationCrsDPX
	Permutation genotype: DPX crossover operator (see e.g. itc.ktu.lt/itc342/Misev342.pdf) More...
class	Permutation::PermutationCrsOBX
	Permutation genotype: Order based crossover operator (see e.g. http://dx.doi.org/10.1016/j.amc.2007.10.013) More...
class	Permutation::PermutationCrsOPX
	Permutation genotype: OPX crossover operator (see e.g. itc.ktu.lt/itc342/Misev342.pdf) More...
class	Permutation::PermutationCrsOX
	Permutation genotype: OX crossover operator (see e.g. http://dx.doi.org/10.1016/j.amc.2007.10.013) More...
class	Permutation::PermutationCrsOX2
	Permutation genotype: Order crossover operator variant where algorithm starts from the beginning when copying the values from second parent (adapted from HeuristicLab) More...
class	Permutation::PermutationCrsPBX
	Permutation genotype: PBX crossover operator (see e.g. http://dx.doi.org/10.1016/j.amc.2007.10.013) More...
class	Permutation::PermutationCrsPMX
	Permutation genotype: PMX crossover operator (see e.g. http://dx.doi.org/10.1016/j.amc.2007.10.013) More...
class	Permutation::PermutationCrsSPX
	Permutation genotype: SPX crossover operator (see e.g. itc.ktu.lt/itc342/Misev342.pdf) More...
class	Permutation::PermutationCrsULX
	Permutation genotype: Uniform like crossover operator (see e.g. itc.ktu.lt/itc342/Misev342.pdf) More...
class	Permutation::PermutationCrsUPMX
	Permutation genotype: UMPX crossover operator (see e.g. itc.ktu.lt/itc342/Misev342.pdf) More...
class	Permutation::PermutationMutIns
	Permutation genotype: insert mutation operator (see e.g. http://dx.doi.org/10.1016/j.amc.2007.10.013) More...
class	Permutation::PermutationMutInv
	Permutation genotype: inversion mutation operator (see e.g. http://dx.doi.org/10.1016/j.amc.2007.10.013) More...
class	Permutation::PermutationMutToggle
	Permutation genotype: toggle mutation operator (see e.g. http://dx.doi.org/10.1016/j.amc.2007.10.013) More...
class	RealValueGenotype
	RealValueGenotype class - abstract genotype class for genotypes that represent a vector of real values (Binary, FloatingPoint) More...
class	Tree::Primitives::AddT< T >
	Add function primitive (Tree genotype) More...
class	Tree::Primitives::Cos
	Cos function primitive (Tree genotype) More...
class	Tree::Primitives::DivT< T >
	Div function primitive (Tree genotype) More...
class	Tree::Primitives::MaxT< T >
	Max function primitive (Tree genotype) More...
class	Tree::Primitives::MinT< T >
	Min function primitive (Tree genotype) More...
class	Tree::Primitives::MulT< T >
	Mul function primitive (Tree genotype) More...
class	Tree::Primitives::NegT< T >
	Neg function primitive (Tree genotype) More...
class	Tree::Node
	Node base class (Tree genotype) More...
class	Tree::Primitives::PosT< T >
	Pos function primitive (Tree genotype) More...
class	Tree::Primitives::Primitive
	Base primitive class (Tree genotype). More...
class	Tree::PrimitiveSet
	Primitive set class: collects all Tree Primitives. More...
class	Tree::Primitives::Sin
	Sin function primitive (Tree genotype) More...
class	Tree::Primitives::SubT< T >
	Sub function primitive (Tree genotype) More...
class	Tree::Primitives::TerminalT< T >
	Terminal tree node class (Tree genotype). More...
class	Tree::Primitives::ERC< T >
	Ephemereal random constant (ERC) node class (Tree genotype). More...
class	Tree::Primitives::ERCD
	Ephemereal random constant (ERC) node of type double (Tree genotype). More...
class	Tree::Tree
	Tree class - implements genotype as a tree. More...
class	Tree::TreeCrxContextPreserved
	Tree genotype: context presevation crx operator. Tries to make crossover at the 'same' point in both trees (with the same path from tree root node). Reference: http://dces.essex.ac.uk/staff/rpoli/gp-field-guide/53GPCrossover.html#11_3. More...
class	Tree::TreeCrxOnePoint
	Tree genotype: one point crx operator. Tries to select a crossing point in parent tree's common region. Reference: http://dces.essex.ac.uk/staff/rpoli/gp-field-guide/53GPCrossover.html#11_3. More...
class	Tree::TreeCrxSimple
	Tree genotype: simple tree crossover operator (with default 90% bias toward functional node) Reference: http://dces.essex.ac.uk/staff/rpoli/gp-field-guide/24RecombinationandMutation.html#7_4. More...
class	Tree::TreeCrxSizeFair
	Tree genotype: size fair crx operator. Reference: http://dces.essex.ac.uk/staff/rpoli/gp-field-guide/53GPCrossover.html#11_3. More...
class	Tree::TreeCrxUniform
	Tree genotype: uniform crx operator. Reference: http://dces.essex.ac.uk/staff/rpoli/gp-field-guide/53GPCrossover.html#11_3. More...
class	Tree::TreeMutGauss
	Tree genotype: standard normal distribution noise mutation operator. Applicable only on ephemereal random constants (ERC) of type 'double'. More...
class	Tree::TreeMutHoist
	Tree genotype: mutation operator that replaces original tree with a randomly chosen subtree from the original tree. More...
class	Tree::TreeMutNodeComplement
	Tree genotype: complement node mutation operator. For the operator to succeed, the chosen primitive must have a defined complement. More...
class	Tree::TreeMutNodeReplace
	Tree genotype: node replacement mutation operator. Tries to replace the selected primitive with a different one with the same number of arguments. More...
class	Tree::TreeMutPermutation
	Tree genotype: permutation mutation operator. More...
class	Tree::TreeMutShrink
	Tree genotype: mutation operator that shrinks randomly chosen subtree. More...
class	Tree::TreeMutSubtree
	Tree genotype: subtree size-fair mutation operator. This is a 'standard' GP subtree mutation. More...
class	GEPChromosome::GEPChromosome
	GEPChromosome class - implements genotype as a Gene Expression Programming chromosome. More...
class	GEPChromosome::GEPChromosomeCrsGene
	GEPChromosome genotype: gene crx operator. Selects a gene number and swaps it between both parents. More...
class	GEPChromosome::GEPChromosomeCrsOnePoint
	GEPChromosome genotype: one point crx operator. Selects a crossing point from which to exchange genetic information. More...
class	GEPChromosome::GEPChromosomeCrsTwoPoint
	GEPChromosome genotype: two point crx operator. Selects two crossing points between which to exchange genetic information. More...
class	GEPChromosome::GEPChromosomeMutGauss
	GEPChromosome genotype: standard normal distribution noise mutation operator. Applicable only on ephemereal random constants (ERC) of type 'double'. More...
class	GEPChromosome::GEPChromosomeMutOp
	GEPChromosome genotype: node replacement mutation operator. Tries to replace the selected primitive with a different one, conforming to the restrictions of the domain where it is located. More...
class	Tree::Primitives::Log
	Log function primitive (Tree genotype) More...
class	Tree::Primitives::Sqrt
	Sqrt function primitive (Tree genotype) More...

Detailed Description