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#ifndef Tree_c_h

#define Tree_c_h

#include "Node.h"

#include "../Genotype.h"

#include <vector>

#define MAX_ARGS 10


namespace Tree

{


class PrimitiveSet;

typedef std::shared_ptr<PrimitiveSet> PrimitiveSetP;


class Tree : public std::vector<NodeP>, public Genotype

{

protected:

    uint growBuild(PrimitiveSetP primitiveSet, uint myDepth);

    uint fullBuild(PrimitiveSetP primitiveSet, uint myDepth);

    uint setSize(uint);

    void setDepth(uint myDepth);

    virtual void initializeFirst(Tree* hometree);


    std::vector<PrimitiveP> userFunctions_; // programatically added functions

    std::vector<PrimitiveP> userTerminals_; // programatically added terminals

    StateP state_;


public:

    Tree();

    ~Tree();

    Tree* copy();


    void growBuild(PrimitiveSetP primitiveSet);

    void fullBuild(PrimitiveSetP primitiveSet);

    void update();

    void execute(void*);

    void addNode(Node* node);

    void addNode(NodeP node);

    void setTerminalValue(std::string, void*);

    void getTerminalValue(std::string, void*);

    void write(XMLNode&);

    void read(XMLNode&);

    void registerParameters(StateP);

    bool initialize (StateP state);


    std::vector<MutationOpP> getMutationOp();

    std::vector<CrossoverOpP> getCrossoverOp();


    bool addFunction(PrimitiveP);

    bool addTerminal(PrimitiveP);


    uint getMaxDepth()

    {   return maxDepth_;   }


    uint getMinDepth()

    {   return minDepth_;   }


    uint getStartDepth()

    {   return startDepth_; }


    PrimitiveSetP primitiveSet_;

    uint iNode_;

    uint startDepth_;

    uint maxDepth_;

    uint minDepth_;

    uint initMaxDepth_;

    uint initMinDepth_;

};


}

typedef std::shared_ptr<Tree::Tree> TreeP;


#endif


Tree::Node
Node base class (Tree genotype).
Definition Node.h:20

Tree::PrimitiveSet
Primitive set class: collects all Tree Primitives.
Definition PrimitiveSet.h:18

Tree::Tree::addFunction
bool addFunction(PrimitiveP)
Add user defined function primitive. Must be called prior to initialization (no impact otherwise).
Definition Tree.cpp:80

Tree::Tree::startDepth_
uint startDepth_
start depth of the first node (0 by default)
Definition Tree_c.h:76

Tree::Tree::fullBuild
uint fullBuild(PrimitiveSetP primitiveSet, uint myDepth)
Build Tree using 'full' method.
Definition Tree.cpp:382

Tree::Tree::minDepth_
uint minDepth_
min allowed Tree depth
Definition Tree_c.h:78

Tree::Tree::getTerminalValue
void getTerminalValue(std::string, void *)
Retrieve a terminal's value.
Definition Tree.cpp:522

Tree::Tree::setTerminalValue
void setTerminalValue(std::string, void *)
Set a terminal's value.
Definition Tree.cpp:504

Tree::Tree::copy
Tree * copy()
Create an identical copy of the genotype object.
Definition Tree.cpp:37

Tree::Tree::initMinDepth_
uint initMinDepth_
min allowed Tree depth at initialization (minDepth_ used if not defined)
Definition Tree_c.h:80

Tree::Tree::growBuild
uint growBuild(PrimitiveSetP primitiveSet, uint myDepth)
Build Tree using 'grow' method.
Definition Tree.cpp:404

Tree::Tree::iNode_
uint iNode_
current node index (when parsing the tree)
Definition Tree_c.h:75

Tree::Tree::addTerminal
bool addTerminal(PrimitiveP)
Add user defined terminal primitive. Must be called prior to initialization (no impact otherwise).
Definition Tree.cpp:91

Tree::Tree::getCrossoverOp
std::vector< CrossoverOpP > getCrossoverOp()
Create and return a vector of crossover operators.
Definition Tree.cpp:49

Tree::Tree::setDepth
void setDepth(uint myDepth)
Calculate depth of each node in the tree.
Definition Tree.cpp:468

Tree::Tree::getMutationOp
std::vector< MutationOpP > getMutationOp()
Create and return a vector of mutation operators.
Definition Tree.cpp:61

Tree::Tree::write
void write(XMLNode &)
Write genotype data to XMLNode.
Definition Tree.cpp:535

Tree::Tree::initMaxDepth_
uint initMaxDepth_
max allowed Tree depth at initialization (maxDepth_ used if not defined)
Definition Tree_c.h:79

Tree::Tree::update
void update()
Calculate depth and subtree sizes of each node in the tree.
Definition Tree.cpp:435

Tree::Tree::registerParameters
void registerParameters(StateP)
Register genotype's parameters (called before Genotype::initialize).
Definition Tree.cpp:98

Tree::Tree::setSize
uint setSize(uint)
Calculate subtree sizes of each node in the tree.
Definition Tree.cpp:451

Tree::Tree::execute
void execute(void *)
Execute current tree.
Definition Tree.cpp:362

Tree::Tree::read
void read(XMLNode &)
Read genotype data from XMLNode.
Definition Tree.cpp:550

Tree::Tree::maxDepth_
uint maxDepth_
max allowed Tree depth
Definition Tree_c.h:77

Tree::Tree::initializeFirst
virtual void initializeFirst(Tree *hometree)
Performs the first Tree initialization (performed only once for each active Tree Genotype)....
Definition Tree.cpp:149

Tree::Tree::initialize
bool initialize(StateP state)
Initialize a genotype object (read parameters, perform sanity check, build data).
Definition Tree.cpp:115