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#ifndef OptIA_h

#define OptIA_h


#include "Algorithm.h"

#include "floatingpoint/FloatingPoint.h"


class OptIA : public Algorithm

{

protected:


    double ubound;

    double lbound;

    uint dimension;

    bool areGenotypesAdded_;


    uint dup;

    double c;

    double tauB;

    bool elitism;


    static bool sortPopulationByFitness (IndividualP ab1,IndividualP ab2) { return ( ab1->fitness->isBetterThan(ab2->fitness)); }


public:


    OptIA();

    void registerParameters(StateP state);

    bool initialize(StateP state);

    bool advanceGeneration(StateP state, DemeP deme);


    bool cloningPhase(StateP state, DemeP deme, std::vector<IndividualP> &clones);

    bool hypermutationPhase(StateP state, DemeP deme, std::vector<IndividualP> &clones);

    bool agingPhase(StateP state, DemeP deme,  std::vector<IndividualP> &clones);

    bool selectionPhase(StateP state, DemeP deme, std::vector<IndividualP> &clones);

    bool birthPhase(StateP state, DemeP deme, std::vector<IndividualP> &clones);

    bool replacePopulation(StateP state, DemeP deme, std::vector<IndividualP> &clones);


};

typedef boost::shared_ptr<OptIA> OptIAP;


#endif // OptIA_h


Algorithm
Algorithm base class.
Definition: Algorithm.h:20

OptIA
Optimization Immune Algorithm (opt-IA, see e.g. http://www.artificial-immune-systems....
Definition: AlgOptIA.h:23

OptIA::registerParameters
void registerParameters(StateP state)
Register algorithm's parameters (if any).
Definition: AlgOptIA.cpp:16

OptIA::advanceGeneration
bool advanceGeneration(StateP state, DemeP deme)
Perform a single generation on a single deme.
Definition: AlgOptIA.cpp:96

OptIA::replacePopulation
bool replacePopulation(StateP state, DemeP deme, std::vector< IndividualP > &clones)
replace population with the contents of the clones vector
Definition: AlgOptIA.cpp:245

OptIA::c
double c
mutation parameter
Definition: AlgOptIA.h:32

OptIA::tauB
double tauB
maximum number of generations without improvement
Definition: AlgOptIA.h:33

OptIA::initialize
bool initialize(StateP state)
Initialize the algorithm, read parameters from the system, do a sanity check.
Definition: AlgOptIA.cpp:29

OptIA::elitism
bool elitism
specifies whether to use elitism or not
Definition: AlgOptIA.h:34

OptIA::sortPopulationByFitness
static bool sortPopulationByFitness(IndividualP ab1, IndividualP ab2)
sort vector of antibodies in regards to their fitness
Definition: AlgOptIA.h:37

OptIA::dup
uint dup
number of clones per antibody
Definition: AlgOptIA.h:31