Population Class Reference

Population class - inherits a vector of Deme objects. More...

#include <Population.h>

Inheritance diagram for Population:

Public Member Functions
bool	initialize (StateP state)
	Initialize population (serial ECF). More...
void	registerParameters (StateP state)
	register population specific parameters More...
void	write (XMLNode &)
	Write population to XMLNode (serial ECF). More...
void	read (XMLNode &)
	Read population from XMLNode (serial ECF). Population must be initialize()-d beforehand! More...
void	updateDemeStats ()
	Update, gather and write statistics of all demes; update and gather HallOfFame of all demes. More...
uint	getNoDemes ()
	return total number of demes More...
uint	getLocalDemeId ()
	return local deme index (local process in parallel ECF) More...
DemeP	getLocalDeme ()
	get first deme (local deme in parallel ECF) More...
HallOfFameP	getHof ()
	get population HallofFame More...
StatCalcP	getStats ()
	get population stats More...

Protected Attributes
uint	nDemes_
	total number of demes in the population More...
uint	myDemeIndex_
	global index of local deme (at local process) - PECF only More...
uint	nIndividuals_
	number of individuals (in each deme!) More...
StateP	state_
HallOfFameP	hof_
	population HallOfFame More...
StatCalcP	stats_
	population statistics More...

Detailed Description

Population class - inherits a vector of Deme objects.

Population may consist of one or more demes. The demes evolve independently of each other.

Parallel ECF: Population object of each process contains only one Deme (called the local Deme)!

Definition at line 14 of file Population.h.

Constructor & Destructor Documentation

Population()

Population::Population

(

)

Definition at line 5 of file Population.cpp.

Member Function Documentation

getHof()

HallOfFameP Population::getHof ( )

inline

get population HallofFame

Definition at line 37 of file Population.h.

getLocalDeme()

DemeP Population::getLocalDeme ( )

inline

get first deme (local deme in parallel ECF)

Definition at line 35 of file Population.h.

getLocalDemeId()

uint Population::getLocalDemeId ( )

inline

return local deme index (local process in parallel ECF)

Definition at line 33 of file Population.h.

getNoDemes()

uint Population::getNoDemes ( )

inline

return total number of demes

Definition at line 31 of file Population.h.

getStats()

StatCalcP Population::getStats ( )

inline

get population stats

Definition at line 39 of file Population.h.

initialize()

bool Population::initialize

(

StateP

state

)

Initialize population (serial ECF).

Initialize population (parallel ECF).

Definition at line 35 of file Population.cpp.

read()

void Population::read

(

XMLNode &

xPopulation

)

Read population from XMLNode (serial ECF). Population must be initialize()-d beforehand!

Read population from XMLNode (parallel ECF). Population must be initialize()-d beforehand!

Definition at line 65 of file Population.cpp.

registerParameters()

void Population::registerParameters

(

StateP

state

)

register population specific parameters

Definition at line 16 of file Population.cpp.

updateDemeStats()

void Population::updateDemeStats

(

)

Update, gather and write statistics of all demes; update and gather HallOfFame of all demes.

Update, gather and write statistics of all demes; update and gather HallOfFame of all demes. (parallel ECF)

Definition at line 100 of file Population.cpp.

write()

void Population::write

(

XMLNode &

xPopulation

)

Write population to XMLNode (serial ECF).

Write population to XMLNode (parallel ECF).

Definition at line 80 of file Population.cpp.

Member Data Documentation

hof_

HallOfFameP Population::hof_

protected

population HallOfFame

Definition at line 21 of file Population.h.

myDemeIndex_

uint Population::myDemeIndex_

protected

global index of local deme (at local process) - PECF only

Definition at line 18 of file Population.h.

nDemes_

uint Population::nDemes_

protected

total number of demes in the population

Definition at line 17 of file Population.h.

nIndividuals_

uint Population::nIndividuals_

protected

number of individuals (in each deme!)

Definition at line 19 of file Population.h.

state_

StateP Population::state_

protected

Definition at line 20 of file Population.h.

stats_

StatCalcP Population::stats_

protected

population statistics

Definition at line 22 of file Population.h.

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The documentation for this class was generated from the following files:

• D:/Projekt/ECF_trunk/ECF/Population.h
• D:/Projekt/ECF_trunk/ECF/Population.cpp