html/_population_8h_source.html

#ifndef Population_h

#define Population_h


#include "Deme.h"


class Population : public std::vector <DemeP>

{

protected:

    uint nDemes_;

    uint myDemeIndex_;

    uint nIndividuals_;

    StateP state_;

    HallOfFameP hof_;

    StatCalcP stats_;


public:

    Population();

    bool initialize(StateP state);

    void registerParameters(StateP state);

    void write(XMLNode&);

    void read(XMLNode&);

    void updateDemeStats();

    uint getNoDemes()

    {   return nDemes_; }

    uint getLocalDemeId()

    {   return myDemeIndex_;    }

    DemeP getLocalDeme()

    {   return this->at(0); }

    HallOfFameP getHof()

    {   return hof_;    }

    StatCalcP getStats()

    {   return stats_;  }

};

typedef boost::shared_ptr<Population> PopulationP;


#endif // Population_h


Population
Population class - inherits a vector of Deme objects.
Definition: Population.h:15

Population::getLocalDeme
DemeP getLocalDeme()
get first deme (local deme in parallel ECF)
Definition: Population.h:35

Population::read
void read(XMLNode &)
Read population from XMLNode (serial ECF). Population must be initialize()-d beforehand!
Definition: Population.cpp:65

Population::myDemeIndex_
uint myDemeIndex_
global index of local deme (at local process) - PECF only
Definition: Population.h:18

Population::nDemes_
uint nDemes_
total number of demes in the population
Definition: Population.h:17

Population::getLocalDemeId
uint getLocalDemeId()
return local deme index (local process in parallel ECF)
Definition: Population.h:33

Population::getStats
StatCalcP getStats()
get population stats
Definition: Population.h:39

Population::stats_
StatCalcP stats_
population statistics
Definition: Population.h:22

Population::initialize
bool initialize(StateP state)
Initialize population (serial ECF).
Definition: Population.cpp:35

Population::nIndividuals_
uint nIndividuals_
number of individuals (in each deme!)
Definition: Population.h:19

Population::write
void write(XMLNode &)
Write population to XMLNode (serial ECF).
Definition: Population.cpp:80

Population::registerParameters
void registerParameters(StateP state)
register population specific parameters
Definition: Population.cpp:16

Population::updateDemeStats
void updateDemeStats()
Update, gather and write statistics of all demes; update and gather HallOfFame of all demes.
Definition: Population.cpp:100

Population::getNoDemes
uint getNoDemes()
return total number of demes
Definition: Population.h:31

Population::getHof
HallOfFameP getHof()
get population HallofFame
Definition: Population.h:37

Population::hof_
HallOfFameP hof_
population HallOfFame
Definition: Population.h:21