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ECF 1.5
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ECF 1.5
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This is the complete list of members for Clonalg, including all inherited members.
| activeDeme_ (defined in Algorithm) | Algorithm | protected |
| advanceGeneration(StateP state, DemeP deme) | Clonalg | virtual |
| Algorithm::advanceGeneration(StateP state) | Algorithm | inlinevirtual |
| Algorithm() (defined in Algorithm) | Algorithm | inline |
| areGenotypesAdded_ (defined in Clonalg) | Clonalg | protected |
| bcastTermination(StateP state) | Algorithm | virtual |
| beta | Clonalg | protected |
| bImplicitEvaluation_ | Algorithm | protected |
| bImplicitMutation_ | Algorithm | protected |
| bImplicitParallel_ | Algorithm | protected |
| birthPhase(StateP state, DemeP deme, std::vector< IndividualP > &clones) (defined in Clonalg) | Clonalg | |
| bSynchronized_ | Algorithm | protected |
| c | Clonalg | protected |
| Clonalg() (defined in Clonalg) | Clonalg | |
| cloningPhase(StateP state, DemeP deme, std::vector< IndividualP > &clones) (defined in Clonalg) | Clonalg | |
| cloningVersion | Clonalg | protected |
| comm_ (defined in Algorithm) | Algorithm | protected |
| copy(IndividualP source) | Algorithm | inline |
| crossover_ | Algorithm | |
| currentBest_ (defined in Algorithm) | Algorithm | protected |
| d | Clonalg | protected |
| demeCopy_ (defined in Algorithm) | Algorithm | protected |
| dimension (defined in Clonalg) | Clonalg | protected |
| evalOp_ | Algorithm | |
| evaluate(IndividualP ind) | Algorithm | inline |
| evaluate(IndividualP ind) | Algorithm | inline |
| getName() | Algorithm | inline |
| getParameterValue(StateP state, std::string name) | Algorithm | inlineprotected |
| hypermutationPhase(StateP state, DemeP deme, std::vector< IndividualP > &clones) (defined in Clonalg) | Clonalg | |
| implicitEvaluate(IndividualP ind) | Algorithm | |
| implicitMutate(IndividualP ind) | Algorithm | |
| implicitParallelOperate(StateP state) | Algorithm | |
| initialize(StateP state) | Clonalg | virtual |
| initializeImplicit(StateP state) | Algorithm | |
| initializeParallel(StateP state) | Algorithm | inline |
| initializeParallel(StateP state) | Algorithm | |
| initializePopulation(StateP) | Algorithm | virtual |
| isConsistent_ | Algorithm | protected |
| isImplicitParallel() | Algorithm | inline |
| isMember(IndividualP single, std::vector< IndividualP > &pool) | Algorithm | inline |
| isParallel() | Algorithm | inlinevirtual |
| jobSize_ (defined in Algorithm) | Algorithm | protected |
| lbound (defined in Clonalg) | Clonalg | protected |
| markAntibodies(DemeP deme) | Clonalg | |
| mate(IndividualP p1, IndividualP p2, IndividualP child) | Algorithm | inline |
| mutate(const std::vector< IndividualP > &pool) | Algorithm | inline |
| mutate(const IndividualP victim) | Algorithm | inline |
| mutate(const IndividualP victim) | Algorithm | inline |
| mutate(const std::vector< IndividualP > &pool) | Algorithm | inline |
| mutation_ | Algorithm | |
| myJob_ | Algorithm | protected |
| n | Clonalg | protected |
| name_ | Algorithm | protected |
| read() (defined in Algorithm) | Algorithm | inlinevirtual |
| receivedMut_ | Algorithm | protected |
| registerParallelParameters(StateP state) | Algorithm | inline |
| registerParallelParameters(StateP state) | Algorithm | |
| registerParameter(StateP state, std::string name, voidP value, enum ECF::type T, std::string description="") | Algorithm | inlineprotected |
| registerParameters(StateP state) | Clonalg | virtual |
| removeFrom(IndividualP victim, std::vector< IndividualP > &pool) | Algorithm | inline |
| replacePopulation(StateP state, DemeP deme, std::vector< IndividualP > &clones) | Clonalg | |
| replaceWith(IndividualP oldInd, IndividualP newInd) | Algorithm | inline |
| replaceWith(uint oldIndId, IndividualP newInd) | Algorithm | inline |
| replaceWith(IndividualP oldInd, IndividualP newInd) | Algorithm | |
| replaceWith(uint oldIndId, IndividualP newInd) | Algorithm | inline |
| requestIds_ | Algorithm | protected |
| requestMutIds_ | Algorithm | protected |
| requests_ (defined in Algorithm) | Algorithm | protected |
| requestsMut_ (defined in Algorithm) | Algorithm | protected |
| restoreIndividuals(std::vector< uint >) | Algorithm | protected |
| restorePopulation() | Algorithm | protected |
| selBestOp (defined in Algorithm) | Algorithm | protected |
| selectionOp | Algorithm | protected |
| selectionPhase(StateP state, DemeP deme, std::vector< IndividualP > &clones) (defined in Clonalg) | Clonalg | |
| selectionScheme | Clonalg | protected |
| sentInds_ | Algorithm | protected |
| setConsistency(IndividualP) | Algorithm | protected |
| sortPopulationByFitness(IndividualP ab1, IndividualP ab2) | Clonalg | inlineprotectedstatic |
| sortPopulationByParentAndFitness(IndividualP ab1, IndividualP ab2) | Clonalg | inlineprotectedstatic |
| state_ (defined in Algorithm) | Algorithm | |
| stored_ | Algorithm | protected |
| storedInds_ (defined in Algorithm) | Algorithm | protected |
| storeGenotypes(std::vector< IndividualP > &) | Algorithm | protected |
| storeIndividual(IndividualP) | Algorithm | protected |
| totalEvaluations_ (defined in Algorithm) | Algorithm | protected |
| ubound (defined in Clonalg) | Clonalg | protected |
| wastedEvaluations_ (defined in Algorithm) | Algorithm | protected |
| ~Algorithm() (defined in Algorithm) | Algorithm | inlinevirtual |
1.9.4