AlgGEP.h

#ifndef ALGGEP_H
#define ALGGEP_H
 
#include "../ECF_base.h"
#include "../Algorithm.h"
#include "../SelRandomOp.h"
#include "../SelBestOp.h"
#include "../SelFitnessProportionalOp.h"
#include "GEPChromosome.h"

class AlgGEP : public Algorithm{
public:
    AlgGEP();
    void registerParameters(StateP state);
    bool initialize(StateP state);
    bool advanceGeneration(StateP state, DemeP deme);
    void invert(StateP state, const std::vector<IndividualP>& pool);
    void invertDc(StateP state, const std::vector<IndividualP>& pool);
    void transpose(StateP state, const std::vector<IndividualP>& pool);
    void transposeIS(StateP state, const std::vector<IndividualP>& pool);
    void transposeRIS(StateP state, const std::vector<IndividualP>& pool);
    void transposeGene(StateP state, const std::vector<IndividualP>& pool);
    void transposeDc(StateP state, const std::vector<IndividualP>& pool);
 
protected:
    double crxRate_;    
    double selPressure_;    
    double invRate_; 
    double invDcRate_; 
    double invMaxLength_; 
    double transISRate_; 
    double transRISRate_; 
    double transGeneRate_; 
    double transDcRate_; 
    double transMaxLength_; 
 
    SelRandomOpP selRandomOp;
    SelBestOpP selBestOp;
    SelFitnessProportionalOpP selFitPropOp;
};
typedef std::shared_ptr<AlgGEP> AlgGEPP;
 
#endif // AlgGEP_h